Ryan,
For the love of god, buy your LM3410s from FutureElectronics instead of Digikey. $1.50 instead of $3.00 is a no brainer.
I might also discourage anyone from literally making one-thousand of these upfront. There are other boost drivers out there in baked, semi-baked, and batter stages.
In terms of reflowing these particularly drivers, really the only thing that prevents you from absolutely speeding through them like nothing at all, are the ICs. But if you're intelligent about it, you'll realize that there are some basic realities that let you speed through even the ICs a bit quicker:
1) Four of the MOSFET pins are continuous. So who cares if you get the solder paste on those four pads perfectly insulated from each other. You don't need to. Put the solder paste on the four pins, and stop worrying.
2) Another of the MOSFET pins goes to ground (above and to the left of the logo). So put some solder paste on that pad, but don't worry if it overflows onto the right / down a bit - you've just got lots more ground for a long way.
3) The final MOSFET pin is right next to a via, but it's the via that the pin itself connects to. If you end up bridging over to the via with solder past, again, who cares.
So that's the MOSFET, and you can zoom right through it. Now for the LM3410.
1) The top two pads flow directly to the resistor pads. Those resistors (and the cap on the left) will "soak" up quite a bit of excess solder if you give it to them. So you really don't need to be perfectly precise with the top two LM3410 pads. It's next to impossible to screw those up.
2) The bottom three pads are the tricky ones. The fastest approach? Put a thin line of solder paste horizontally across all three pins. Then take a toothpick, and "slice" the line into three, by running the toothpick down the ridge between pads. Viola, three pads with a little tad of solder paste on each.
Final note: Place the ICs last, or potentialy right before the set resistors. The ICs will have the least natural grip (smallest pins). The diode does too, but it's so light weight that jiggling the board won't move it. But the ICs move even when stuck in some paste, so do them last.
If you follow this approach, you can seriously get through them at nearly 1 per minute.