Gregg, thank you for showing us the other app. It looks very useful. I look forward to trying it out.
Steve, I suspect the problem with your model is the 10 mRad divergence combined with 0.001 waist/emitter size. I doubt any real diode could recreate this model in the real world.
Lastly, I received my two cylindrical lenses from Thor Labs. They work exactly as planned, collimating the fast and slow axis exactly where I wanted them to. I get an extremely low divergence beam across the night sky. The catch: spherical aberration. Mainly with the short focal length, fast axis lens, I get too much splash from the aberration. The proper fix would be an acylindircal lens, but these skyrocket in cost, so I will reevaluate my approach.
P.S. I finally got my Sanwu G7. It has the best divergence and power out of all of the following that I have tried:
OPT 3 element
OPT single element
DTR 3 element
DTR G2 (won't screw far enough into my OPT diode mount to focus)
Sanwu G7