Depending on the timing between the pulses you'll have cooling (radiative at least) effects skewing your results but they just give you a slightly conservative reading compared to actual, which is not too much of an issue. Also there's the thermal impedances of the multiple layers, but we're just splitting graphite layers here =P .
Condition of the qswitch likely has a large effect on output power and I'm willing to bet it is why we see such variance between different members' findings.
I still want one of these, heh, it's on my bucket list along with a lot of other things I'm sure HMike would find fun, heh.
Another thing I noticed is that when I used a PIN diode to monitor the output on the scope was that above some voltage level (I dont remember what level) I would get multiple pulses and that wasn't really consistant.