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It's not the coatings that's the problem, the problem is the driver. The driver creates a wave in the crystal which changes the crystals properties at certain wavelengths, if the driver is at an incorrect frequency then it can't modulate at that wavelength.
-Adam
Wow! you learn something new every day. I always just assumed that the coatings were responsible (and I still do think they matter a little in terms of losses) but given how AOMs work that makes perfect sense...